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Texts: Use the program: global-align.sh to globally align THISLINE and ISALIGNED with the BLOSUM30 substitution matrix. To do this, you will need to specify the BLOSUM30 matrix as an argument after the -data flag in the command. For example, you will need to add: -data/data/compres/aligners/BLOSUM30 The output should look like: 1THIS--LINE- 118:11 1--ISALIGNED9 Page 1 Now, confirm by hand using the BLOSUM30 matrix the math that results in the same score as the global alignment script. Please input the BLOSUM30 alignment score values below for each of the aligned columns from the alignment above (and think about how the BLOSUM30 matrix treats end gaps) T to Gap is H to Gap is I to I is S to S is
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Question Text | Texts: Use the program:
global-align.sh
to globally align THISLINE and ISALIGNED with the BLOSUM30 substitution matrix. To do this, you will need to specify the BLOSUM30 matrix as an argument after the -data flag in the command. For example, you will need to add:
-data/data/compres/aligners/BLOSUM30
The output should look like:
1THIS--LINE- 118:11 1--ISALIGNED9
Page 1
Now, confirm by hand using the BLOSUM30 matrix the math that results in the same score as the global alignment script.
Please input the BLOSUM30 alignment score values below for each of the aligned columns from the alignment above (and think about how the BLOSUM30 matrix treats end gaps)
T to Gap is
H to Gap is
I to I is
S to S is |
Topic | All topics |
Subject | Biology |
Class | Class 11 |